\documentclass[twoside]{book}

% Packages required by doxygen
\usepackage{calc}
\usepackage{doxygen}
\usepackage{graphicx}
\usepackage[utf8]{inputenc}
\usepackage{makeidx}
\usepackage{multicol}
\usepackage{multirow}
\usepackage{textcomp}
\usepackage[table]{xcolor}

% Font selection
\usepackage[T1]{fontenc}
\usepackage{mathptmx}
\usepackage[scaled=.90]{helvet}
\usepackage{courier}
\usepackage{amssymb}
\usepackage{sectsty}
\renewcommand{\familydefault}{\sfdefault}
\allsectionsfont{%
  \fontseries{bc}\selectfont%
  \color{darkgray}%
}
\renewcommand{\DoxyLabelFont}{%
  \fontseries{bc}\selectfont%
  \color{darkgray}%
}

% Page & text layout
\usepackage{geometry}
\geometry{%
  a4paper,%
  top=2.5cm,%
  bottom=2.5cm,%
  left=2.5cm,%
  right=2.5cm%
}
\tolerance=750
\hfuzz=15pt
\hbadness=750
\setlength{\emergencystretch}{15pt}
\setlength{\parindent}{0cm}
\setlength{\parskip}{0.2cm}
\makeatletter
\renewcommand{\paragraph}{%
  \@startsection{paragraph}{4}{0ex}{-1.0ex}{1.0ex}{%
    \normalfont\normalsize\bfseries\SS@parafont%
  }%
}
\renewcommand{\subparagraph}{%
  \@startsection{subparagraph}{5}{0ex}{-1.0ex}{1.0ex}{%
    \normalfont\normalsize\bfseries\SS@subparafont%
  }%
}
\makeatother

% Headers & footers
\usepackage{fancyhdr}
\pagestyle{fancyplain}
\fancyhead[LE]{\fancyplain{}{\bfseries\thepage}}
\fancyhead[CE]{\fancyplain{}{}}
\fancyhead[RE]{\fancyplain{}{\bfseries\leftmark}}
\fancyhead[LO]{\fancyplain{}{\bfseries\rightmark}}
\fancyhead[CO]{\fancyplain{}{}}
\fancyhead[RO]{\fancyplain{}{\bfseries\thepage}}
\fancyfoot[LE]{\fancyplain{}{}}
\fancyfoot[CE]{\fancyplain{}{}}
\fancyfoot[RE]{\fancyplain{}{\bfseries\scriptsize Generated on Fri Dec 2 2016 12\-:41\-:46 for L\-C\-F\-I\-Plus by Doxygen }}
\fancyfoot[LO]{\fancyplain{}{\bfseries\scriptsize Generated on Fri Dec 2 2016 12\-:41\-:46 for L\-C\-F\-I\-Plus by Doxygen }}
\fancyfoot[CO]{\fancyplain{}{}}
\fancyfoot[RO]{\fancyplain{}{}}
\renewcommand{\footrulewidth}{0.4pt}
\renewcommand{\chaptermark}[1]{%
  \markboth{#1}{}%
}
\renewcommand{\sectionmark}[1]{%
  \markright{\thesection\ #1}%
}

% Indices & bibliography
\usepackage{natbib}
\usepackage[titles]{tocloft}
\setcounter{tocdepth}{3}
\setcounter{secnumdepth}{5}
\makeindex

% Custom commands
\newcommand{\clearemptydoublepage}{%
  \newpage{\pagestyle{empty}\cleardoublepage}%
}


%===== C O N T E N T S =====

\begin{document}

% Titlepage & ToC
\pagenumbering{roman}
\begin{titlepage}
\vspace*{7cm}
\begin{center}%
{\Large L\-C\-F\-I\-Plus \\[1ex]\large 0.\-6.\-5 }\\
\vspace*{1cm}
{\large Generated by Doxygen 1.8.6}\\
\vspace*{0.5cm}
{\small Fri Dec 2 2016 12:41:46}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}

%--- Begin generated contents ---
\chapter{L\-C\-F\-I\-Plus}
\label{index}\input{index}
\chapter{Namespace Index}
\input{namespaces}
\chapter{Hierarchical Index}
\input{hierarchy}
\chapter{Class Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Namespace Documentation}
\input{namespacelcfiplus}
\input{namespacelcfiplus_1_1algoEtc}
\input{namespacelcfiplus_1_1algoSigProb}
\input{namespacelcfiplus_1_1tpar}
\input{namespacelcfiplus_1_1VertexFinderPerfect}
\input{namespacelcfiplus_1_1VertexFinderSuehara}
\chapter{Class Documentation}
\input{classlcfiplus_1_1Algorithm}
\input{classlcfiplus_1_1BuildUpVertex}
\input{structlcfiplus_1_1ZHHAlgo_1_1data}
\input{structlcfiplus_1_1DeleteVector}
\input{structlcfiplus_1_1ErrorRescale}
\input{classlcfiplus_1_1Event}
\input{classlcfiplus_1_1EventNavigator}
\input{classlcfiplus_1_1EventStore}
\input{classlcfiplus_1_1EventStoreObserver}
\input{classlcfiplus_1_1Exception}
\input{classlcfiplus_1_1FlavorTag}
\input{structlcfiplus_1_1FlavtagCategory}
\input{classlcfiplus_1_1FlavtagReader}
\input{structlcfiplus_1_1FlavtagType}
\input{classlcfiplus_1_1Ft1VtxProb}
\input{classlcfiplus_1_1FTAlgo}
\input{classlcfiplus_1_1FtAuxiliary}
\input{classlcfiplus_1_1FtAuxiliaryM}
\input{classlcfiplus_1_1FtD0bProb}
\input{classlcfiplus_1_1FtD0bProbIP}
\input{classlcfiplus_1_1FtD0bProbSigned}
\input{classlcfiplus_1_1FtD0cProb}
\input{classlcfiplus_1_1FtD0cProbIP}
\input{classlcfiplus_1_1FtD0cProbSigned}
\input{classlcfiplus_1_1FtD0qProb}
\input{classlcfiplus_1_1FtD0qProbSigned}
\input{classlcfiplus_1_1FtIPProbHolder}
\input{classlcfiplus_1_1FtJetE}
\input{classlcfiplus_1_1FtJProbR}
\input{classlcfiplus_1_1FtJProbR2}
\input{classlcfiplus_1_1FtJProbR25Sigma}
\input{classlcfiplus_1_1FtJProbR5Sigma}
\input{classlcfiplus_1_1FtJProbZ}
\input{classlcfiplus_1_1FtJProbZ2}
\input{classlcfiplus_1_1FtJProbZ25Sigma}
\input{classlcfiplus_1_1FtJProbZ5Sigma}
\input{classlcfiplus_1_1FTManager}
\input{classlcfiplus_1_1FtMCNB}
\input{classlcfiplus_1_1FtMCNC}
\input{classlcfiplus_1_1FtMCNElectron}
\input{classlcfiplus_1_1FtMCNMuon}
\input{classlcfiplus_1_1FtNElectron}
\input{classlcfiplus_1_1FtNElectronPID}
\input{classlcfiplus_1_1FtNMuon}
\input{classlcfiplus_1_1FtNMuonPID}
\input{classlcfiplus_1_1FtNSecTracks}
\input{classlcfiplus_1_1FtNtrk}
\input{classlcfiplus_1_1FtNtrkWithoutV0}
\input{classlcfiplus_1_1FtNvtx}
\input{classlcfiplus_1_1FtNvtxAll}
\input{classlcfiplus_1_1FtSphericity}
\input{classlcfiplus_1_1FtTrk1D0Sig}
\input{classlcfiplus_1_1FtTrk1Pt}
\input{classlcfiplus_1_1FtTrk1PtByJetE}
\input{classlcfiplus_1_1FtTrk1Z0Sig}
\input{classlcfiplus_1_1FtTrk2D0Sig}
\input{classlcfiplus_1_1FtTrk2Pt}
\input{classlcfiplus_1_1FtTrk2PtByJetE}
\input{classlcfiplus_1_1FtTrk2Z0Sig}
\input{classlcfiplus_1_1FtTrkMass}
\input{classlcfiplus_1_1FtTrkMass2}
\input{classlcfiplus_1_1FtVtxDirAng1}
\input{classlcfiplus_1_1FtVtxDirAng12}
\input{classlcfiplus_1_1FtVtxDirAng12TimesJetE}
\input{classlcfiplus_1_1FtVtxDirAng1TimesJetE}
\input{classlcfiplus_1_1FtVtxDirAng2}
\input{classlcfiplus_1_1FtVtxDirAng2TimesJetE}
\input{classlcfiplus_1_1FtVtxLen1}
\input{classlcfiplus_1_1FtVtxLen12}
\input{classlcfiplus_1_1FtVtxLen12All}
\input{classlcfiplus_1_1FtVtxLen12AllByJetE}
\input{classlcfiplus_1_1FtVtxLen12ByJetE}
\input{classlcfiplus_1_1FtVtxLen1ByJetE}
\input{classlcfiplus_1_1FtVtxLen2}
\input{classlcfiplus_1_1FtVtxLen2ByJetE}
\input{classlcfiplus_1_1FtVtxLongitudinalDeviation}
\input{classlcfiplus_1_1FtVtxMass}
\input{classlcfiplus_1_1FtVtxMass1}
\input{classlcfiplus_1_1FtVtxMass2}
\input{classlcfiplus_1_1FtVtxMassAll}
\input{classlcfiplus_1_1FtVtxMassPtCorr}
\input{classlcfiplus_1_1FtVtxMom}
\input{classlcfiplus_1_1FtVtxMom1}
\input{classlcfiplus_1_1FtVtxMom1ByJetE}
\input{classlcfiplus_1_1FtVtxMom2}
\input{classlcfiplus_1_1FtVtxMom2ByJetE}
\input{classlcfiplus_1_1FtVtxMomByJetE}
\input{classlcfiplus_1_1FtVtxMult}
\input{classlcfiplus_1_1FtVtxMult1}
\input{classlcfiplus_1_1FtVtxMult2}
\input{classlcfiplus_1_1FtVtxProb}
\input{classlcfiplus_1_1FtVtxSig1}
\input{classlcfiplus_1_1FtVtxSig12}
\input{classlcfiplus_1_1FtVtxSig12ByJetE}
\input{classlcfiplus_1_1FtVtxSig1ByJetE}
\input{classlcfiplus_1_1FtVtxSig2}
\input{classlcfiplus_1_1FtVtxSig2ByJetE}
\input{classlcfiplus_1_1FtZ0bProb}
\input{classlcfiplus_1_1FtZ0bProbIP}
\input{classlcfiplus_1_1FtZ0cProb}
\input{classlcfiplus_1_1FtZ0cProbIP}
\input{classlcfiplus_1_1FtZ0qProb}
\input{classlcfiplus_1_1GeometryHandler}
\input{classlcfiplus_1_1Globals}
\input{classlcfiplus_1_1Helix}
\input{classlcfiplus_1_1Helix_1_1HelixLineDistance2DerivFunctor}
\input{classlcfiplus_1_1Helix_1_1HelixLineDistance2Functor}
\input{structlcfiplus_1_1TrainMVA_1_1InputFileInfo}
\input{classlcfiplus_1_1Jet}
\input{classlcfiplus_1_1JetClustering}
\input{structlcfiplus_1_1JetConfig}
\input{classlcfiplus_1_1JetFinder}
\input{classlcfiplus_1_1JetVertexRefiner}
\input{structKalTrk}
\input{structKalVtx}
\input{classlcfiplus_1_1LcfiInstance}
\input{classlcfiplus_1_1LcfiInterface}
\input{classLcfiplusProcessor}
\input{classlcfiplus_1_1LCIOStorer}
\input{classlcfiplus_1_1MakeNtuple}
\input{classlcfiplus_1_1MCColorSinglet}
\input{classlcfiplus_1_1MCParticle}
\input{classlcfiplus_1_1MCVertex}
\input{classlcfiplus_1_1Neutral}
\input{classlcfiplus_1_1Parameters}
\input{classlcfiplus_1_1Pi0Finder}
\input{classlcfiplus_1_1Pi0VertexFinder}
\input{classlcfiplus_1_1Point}
\input{classlcfiplus_1_1PointBase}
\input{classlcfiplus_1_1GeometryHandler_1_1PointFitDerivFunctor}
\input{classlcfiplus_1_1GeometryHandler_1_1PointFitFunctor}
\input{classlcfiplus_1_1PrimaryVertexFinder}
\input{classlcfiplus_1_1ReadMVA}
\input{structlcfiplus_1_1SecondaryVertexConfig}
\input{classlcfiplus_1_1SortTracksByChi2}
\input{classlcfiplus_1_1VertexFinderSuehara_1_1SortTracksByIPSig}
\input{structlcfiplus_1_1EventStore_1_1StoredEntry}
\input{classlcfiplus_1_1TestAlgo}
\input{classlcfiplus_1_1TestAlgoV0}
\input{classlcfiplus_1_1Track}
\input{classlcfiplus_1_1TrackNtuple}
\input{classlcfiplus_1_1TrackPocaXY}
\input{classlcfiplus_1_1TrackSelector}
\input{classlcfiplus_1_1TrackSelectorConfig}
\input{classTrackToPFOConverterProcessor}
\input{classlcfiplus_1_1TrainMVA}
\input{classlcfiplus_1_1TreeStorer}
\input{classlcfiplus_1_1Helix_1_1VarianceDerivFunctor}
\input{classlcfiplus_1_1Helix_1_1VarianceFunctor}
\input{classlcfiplus_1_1Vertex}
\input{classlcfiplus_1_1VertexAnalysis}
\input{classlcfiplus_1_1VertexFinderSuehara_1_1VertexFinderSueharaConfig}
\input{classlcfiplus_1_1VertexFinderTearDown}
\input{classlcfiplus_1_1VertexFitterLCFI}
\input{classlcfiplus_1_1VertexFitterSimple}
\input{classlcfiplus_1_1VertexLine}
\input{classlcfiplus_1_1VertexMassRecovery}
\input{classlcfiplus_1_1VertexSelector}
\input{classlcfiplus_1_1VertexSelectorConfig}
\input{classlcfiplus_1_1ZHHAlgo}
\chapter{File Documentation}
\input{algo_8cc}
\input{algo_8h}
\input{algoEtc_8cc}
\input{algoEtc_8h}
\input{algoSigProb_8cc}
\input{algoSigProb_8h}
\input{bin__LinkDef_8h}
\input{Driver_8cc}
\input{Driver_8h}
\input{EventNavigator_8cc}
\input{EventNavigator_8h}
\input{EventStore_8cc}
\input{EventStore_8h}
\input{FlavorTag_8cc}
\input{FlavorTag_8h}
\input{flavtag_8cc}
\input{flavtag_8h}
\input{geometry_8cc}
\input{geometry_8h}
\input{JetFinder_8cc}
\input{JetFinder_8h}
\input{LcfiInterface_8cc}
\input{LcfiInterface_8h}
\input{lcfiplus_8cc}
\input{lcfiplus_8h}
\input{LcfiplusProcessor_8cc}
\input{LcfiplusProcessor_8h}
\input{LCIOStorer_8cc}
\input{LCIOStorer_8h}
\input{LinkDef_8h}
\input{MakeNtuple_8cc}
\input{MakeNtuple_8h}
\input{overview_8html}
\input{Pi0VertexFinder_8cc}
\input{Pi0VertexFinder_8h}
\input{process_8cc}
\input{process_8h}
\input{ReadMVA_8cc}
\input{ReadMVA_8h}
\input{testproc_8cc}
\input{testproc_8h}
\input{TrackNtuple_8cc}
\input{TrackNtuple_8h}
\input{TrackSelector_8h}
\input{TrackToPFOConverterProcessor_8cc}
\input{TrackToPFOConverterProcessor_8h}
\input{TrainMVA_8cc}
\input{TrainMVA_8h}
\input{TreeStorer_8cc}
\input{TreeStorer_8h}
\input{VertexFinderPerfect_8cc}
\input{VertexFinderPerfect_8h}
\input{VertexFinderSuehara_8cc}
\input{VertexFinderSuehara_8h}
\input{VertexFinderTearDown_8cc}
\input{VertexFinderTearDown_8h}
\input{VertexFitterLCFI_8h}
\input{VertexFitterSimple_8h}
\input{VertexMassRecovery_8cc}
\input{VertexMassRecovery_8h}
\input{VertexSelector_8h}
%--- End generated contents ---

% Index
\newpage
\phantomsection
\addcontentsline{toc}{chapter}{Index}
\printindex

\end{document}
